There's a number of possibilities that need to be checked, like the sail switch, thermostat, etc. What brand is your furnace? I have a Suburban water heater that also lost spark after only a few uses. After checking everything else I narrowed the problem down to a bad control board. Take a look:
http://www.forestriverforums.com/for...as-188117.html
These boards have a sordid history of suffering an early demise. What, you may ask, does this have to do with a bad furnace? At least with Suburban, the DSI system used for the water heaters is the same as their people heaters. I'm pretty sure that might apply to Atwood as well.
I assume your furnace is still under warranty, my water heater was as well but I fixed it myself just to save the hassle of dragging the trailer to the dealership just to have another sketchy part installed.
I can't say that's your issue, but it is something to consider.