I also put a center shelf in all the cupboards for the wife, for extra storage. The extra linen cabinet in the bath was nice, with additional towel bars. Above the right side cabinets turned out be perfect for all our fishing rods, stored in pool noodles for protection. I also put a standing cabinet next to the door coming in, painted it black and added a 1/2" marble top for a bar and pantry. Got out my 3" and 4" hole saws and put in a bunch more cup holders.
No problem with the bed for us, as we both snore loudly and like the separation of the bedroom from the drop down queen in the back.